Databases
PrimBrainLnc
Database of lncRNAs predicted from eight different brain regions of four primate species: human, chimpanzee, gorilla and gibbon.
Database access: PrimBrainLnc
Software developed in our group:
pod5Viewer
A GUI for viewing raw Nanopore sequencing data in pod5 format.
Deep Learning Reaction Network (DLRN) App
A GUI for the analysis of time-resolved spectroscopy and agarose gel data sets.
Chromatin Capture Upsampling Toolbox (CCUT)
A Versatile and unified Framework to Train Your Chromatin Capture Deep Learning Models.
NanopoReaTA
Nanopore Real Time Analysis Pipeline
beeRapp
Automated high-throughput explorative analysis of multivariate behavioral data
Cortexa
Cortexa is a comprehensive web-portal that incorporates RNA-sequencing datasets from the mouse cerebral cortex (longitudinal or cell-specific) and the hippocampus with a focus on alternative splicing analysis. Analyze your own data in the context of cortical development or cell-specific alternative splicing.
www.cortexa-rna.com | Publication
Neuroimage Denoiser - Deep Learning Framework to remove noise from transient fluorescent signals in functional imaging
Noise is an abundant phenomenon impacting all experimental systems used in neuroscience. In imaging systems, noise affects pixels individually without any spatiotemporal relations. We employ U-Net to remove noise from microscopic imaging data.
| raw | denoised |
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GitHub | PyPi | Publication
CollembolAI
Macrophotography and computer vision workflow to digitize and characterize samples of soil invertebrate communities preserved in fluid
IntelliPy
GUI for analyzing IntelliCage data
Mislabeling_Coinference
Mislabeling_Coinference is a Matlab-based software package for a simultaneous inference of generalised linear model parameters (implemented is logit-function) and of the category-specific mislabeling risks.
SPA
Scalable Probabilistic Approximation (SPA) Algorithm
NextGenBender
Epigenetics pipeline
Invariant-Latent-Markov
A scalable approach to the computation of invariant measures for high-dimensional Markovian systems
Bayesian-Model-Reduction-Toolkit
Toolbox for the paper "Towards a direct probability-preserving identification of reduced dynamical models for categorical processes"
PRP-Measure-MATLAB
Application of the Posterior Relation Probability measure (PRP-measure) to an analysis of the human SNP data (Single Nucleotide Polymorphisms or point mutations in a human genome)