Publications

Peer-reviewed Journal Articles

An * indicates equal contribution or joint correspondence

2025

  • Melina Weiß, Mareike Selig, Johannes Friedrich, Anna Wierczeiko, Stefan Diederich, Helen Sigel, Janna Bredow, Florian S. Eichler, Amanda Nagy, Denise Seyler, Laura Holthöfer, Susanne Gerber, Susann Schweiger, Matthias Linke, Annette Bley: Deep intronic SVA_E Retrotransposition as a Novel Factor in Canavan Disease Pathogenesis. Accepted for publication in Human Gene Therapy (2025)

  • Charlotte Hewel, Anna Wierczeiko, Johannes Miedema, Felix Hofmann, Stephan Weissbach, Vincent Dietrich, Johannes Friedrich, Laura Holthoefer, Verena Haug, Stefan Muendnich, Lukas Schartel, Kristi Jenson, Stefan Diederich, Stanislav Sys, Tamer Butto, Norbert Paul, Jonas Koch, Frank Lyko, Florian Kraft, Susann Schweiger, Edward A Lemke, Mark Helm, Matthias Linke, Susanne Gerber: Direct RNA sequencing (RNA004) allows for improved transcriptome assessment and near real-time tracking of methylation for medical applications https://doi.org/10.1101/2024.07.25.605188


  • Nicolò Alagna, Stefan Mündnich, Johannes Miedema, Stefan Pastore, Lioba Lehmann, Anna Wierczeiko, Johannes Friedrich, Lukas Walz, Marko Jörg, Tamer Butto, Kristina Friedland, Mark Helm, Susanne Gerber: ModiDeC: a multi-RNA modification classifier for direct nanopore sequencingbioRxiv 2025.01.04.631307; doi: https://doi.org/10.1101/2025.01.04.631307


  • Stefan Pastore, Philipp Hillenbrand, Nils Molnar, Irina Kovlyagina, Monika Chanu Chongtham, Stanislav Sys, Beat Lutz, Margarita Tevosian and Susanne Gerber: ClearFinder: a Python GUI for annotating cells in cleared mouse brain. BMC Bioinformatics, 26 (24), (2025)

2024

  • Nicolò Alagna*,  Jannes Spangenberg, Stefan Mündnich, Anne Busch, Stefan Pastore, Anna Wierczeiko, Winfried Goettsch, Vincent Dietrich, Leszek Pryszcz,  Sonia Cruciani,  Eva Maria Novoa, Kandarp Joshi, Ranjan Perera, Salvatore Di Giorgio, Paola Arrubarrena, Irem Tellioglu, Chi-Lam Poon, Yuk Wan, Jonathan Göke, Andreas Hildebrand*, Christoph Dieterich*, Mark Helm*, Manja Marz*, Susanne Gerber*: Predicting RNA modifications by nanopore sequencing: The RMaP challenge. https://www.researchsquare.com/article/rs-5241143/v1

  • J. Krummeich, L. Nardi, C. Caliendo, D. Aschauer, V. Engelhardt, A. Arlt, J. Maier, F. Bicker, M. D. Kwiatkowski, K. Rolski, K. Vincze, R. Schneider, S. Rumpel, S. Gerber, M. J. Schmeisser, S. Schweiger: Premature cognitive decline in a mouse model of tuberous sclerosis. https://doi.org/10.1111/acel.14318 Aging Cell, e14318 (2024)

IF: 8.0


IF: 5.8

IF: 6.1


IF: 3,6

IF: 12.8

IF: 5.8

IF: 9.8

2023

IF: 4.7


  • Illia Horenko, Edoardo Vecchi, Juraj Kardos, Olaf Schenk, Andreas Wachter,  Terence O’Kane, Patrick Gagliardini and Susanne Gerber: On cheap entropy-sparsified regression learning.  Proceedings of the National Academy of Sciences of the United States of America  (PNAS), 120 (1) e2214972120, https://doi.org/10.1073/pnas.22149721, (2023).

    IF: 12.8

2022

 

2021




2020


2019

2018

2017

2016

2015

2014

2011 and before

Books and Book-Chapter

Theses: